Stem-loop ath-MIR822

Accession

MI0005379

Description

Arabidopsis thaliana ath-MIR822 precursor miRNA

Literature search

4 open access papers mention ath-MIR822
(6 sentences)

Sequence

cgaccuuaaguauaaguagauauauggggauguaacgcauguuguuuucUGCGGGAAGCAUUUGCACAUGuuucguggagaaugaaaucacauuccauacaugaauaauaauuaccuuuuagauagaacaucguacugcuugaaaaaacauguuaaugucauaaacuuuaugaugaaaacaccuauaaaaagcguuuuuucaagcaugugcuaucuaugaagguaauuacuauucauguauaaaauaugauuuuauccuccauaaaacaUGUGCAAAUGCUUUCUACAGGaaacaauauacguugcauccccaucuacuuacacuuaaggucguugu
(((((((((((.((((((((....(((((((((((((.(((((((((((((.(((((((((((((((((((((.((((((.(((((((((.(((..(((((((((((.((((((((((((((((((.(((......(((((((((((((.((((...(((((((...)))))))...))))............)))))))))))))))).))))))).))))))))))).)))))))))))..))).))))))))).)))))).))))))))))))))))))))).))))))))))))).))))))))))))))))))))).)))))))))))....

Structure

----           a        uaua             c             C                     c      a         c   cc           a           -       a   ucguac             -----------a    aau       a 
    cgaccuuaagu uaaguaga    uggggauguaacg auguuguuuucUG GGGAAGCAUUUGCACAUGuuu guggag augaaauca auu  auacaugaaua uaauuaccuuu uagauag aca      ugcuugaaaaaac            uguu   gucauaa  
    ||||||||||| ||||||||    ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||  ||||||||||| ||||||||||| ||||||| |||      |||||||||||||            ||||   ||||||| c
    gcuggaauuca auucaucu    accccuacguugc uauaacaaaGGAC UCUUUCGUAAACGUGUacaaa uaccuc uauuuuagu uaa  uauguacuuau auuaauggaag aucuauc ugu      acgaacuuuuuug            acaa   uaguauu  
uguu           c        ----             a             A                     a      c         a   aa           c           u       g   ------             cgaaaaauaucc    aag       u 

Annotation confidence Not enough data

Genome context

chr5: 897020-897356 [-]

Mature ath-miR822-5p

• Accession: MIMAT0004239
• Description: Arabidopsis thaliana ath-miR822-5p mature miRNA
• Sequence: 50 - UGCGGGAAGCAUUUGCACAUG - 70
• Evidence: experimental ; 454 [1], Illumina [2]

Mature ath-miR822-3p

• Accession: MIMAT0032018
• Description: Arabidopsis thaliana ath-miR822-3p mature miRNA
• Sequence: 270 - UGUGCAAAUGCUUUCUACAGG - 290
• Evidence: not_experimental

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177