Stem-loop mdo-mir-23a

Accession

MI0005363

Description

Monodelphis domestica mdo-mir-23a precursor miRNA

Sequence

21846 reads, 391.0 reads per million, 5 experiments

cggcuGGGGUUCCUGGGGAUGGGAUUUgauuacugccacaaAUCACAUUGCCAGGGAUUUCCAAcugaccacu
(((.((((((((((((.((((.((((((..........)))))).)))).))))))).))))).)))......

Structure

------   c     -       G    G      auua 
      cgg uGGGG UUCCUGG GAUG GAUUUg    c
      ||| ||||| ||||||| |||| ||||||     
      guc ACCUU AGGGACC UUAC CUAaac    u
ucacca   A     U       G    A      accg 

Annotation confidence High

Genome context

ref|NC_077229.2|: 443187361-443187433 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-23a

Mature mdo-miR-23a-5p

• Accession: MIMAT0026710
• Description: Monodelphis domestica mdo-miR-23a-5p mature miRNA
• Sequence: 6 - GGGGUUCCUGGGGAUGGGAUUU - 27
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-23a-3p

• Accession: MIMAT0004173
• Description: Monodelphis domestica mdo-miR-23a-3p mature miRNA
• Sequence: 42 - AUCACAUUGCCAGGGAUUUCCAA - 64
• Evidence: experimental ; PCR [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45