Stem-loop mdo-mir-365

Accession

MI0005326

Description

Monodelphis domestica mdo-mir-365 precursor miRNA

Gene family

MIPF0000061; mir-365

Sequence

650 reads, 13 reads per million, 5 experiments

ccgcagggaaaauGAGGGACUUUUGGGGGCAGAUGUguuuccauuacacuaucaUAAUGCCCCUAAAAAUCCUUAUugcucuugcag
..((((((..((((((((..((((((((((((((((((.......)))).)))....))))))))))).))))))))..))))))..

Structure

cc      aa        AC           ----   -    uu 
  gcaggg  aauGAGGG  UUUUGGGGGCA    GAU GUgu  c
  ||||||  ||||||||  |||||||||||    ||| ||||  c
  cguucu  uUAUUCCU  AAAAUCCCCGU    cua caca  a
ga      cg        -A           AAUa   u    uu 

Annotation confidence High

Genome context

chr6: 108690913-108690999 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-365

Mature mdo-miR-365-3p

• Accession: MIMAT0004137
• Description: Monodelphis domestica mdo-miR-365-3p mature miRNA
• Sequence: 55 - UAAUGCCCCUAAAAAUCCUUAU - 76
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-365-5p

• Accession: MIMAT0026683
• Description: Monodelphis domestica mdo-miR-365-5p mature miRNA
• Sequence: 14 - GAGGGACUUUUGGGGGCAGAUGU - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45