Stem-loop mdo-mir-338

Accession

MI0005325

Description

Monodelphis domestica mdo-mir-338 precursor miRNA

Sequence

24371 reads, 525.0 reads per million, 5 experiments

ggccuuccuccccAACAAUAUCCUGAUGCUGAGUgagcggcacauggagacUCCAGCAUCAGUGAUUUUGUUGAagaggguggcugcca
((((.(((((..((((((.(((((((((((((((...((.....))...))).))))))))).))).))))))..))))).))))....

Structure

----    u     cc      U   -         -   gag  g 
    ggcc uccuc  cAACAA AUC CUGAUGCUG AGU   cg c
    |||| |||||  |||||| ||| ||||||||| |||   || a
    ucgg gggag  GUUGUU UAG GACUACGAC Uca   gu c
accg    u     aA      U   U         C   gag  a 

Annotation confidence High

Genome context

ref|NC_077228.1|: 233016757-233016845 [+]

Mature mdo-miR-338-5p

• Accession: MIMAT0061140
• Description: Monodelphis domestica mdo-miR-338-5p mature miRNA
• Sequence: 14 - AACAAUAUCCUGAUGCUGAGU - 34
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-miR-338-3p

• Accession: MIMAT0004136
• Description: Monodelphis domestica mdo-miR-338-3p mature miRNA
• Sequence: 52 - UCCAGCAUCAGUGAUUUUGUUGA - 74
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72