Stem-loop mdo-mir-216

Accession

MI0005320

Description

Monodelphis domestica mdo-mir-216 precursor miRNA

Sequence

44 reads, 1 reads per million, 4 experiments

gauggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGagauguuaauaaauucccucacaguggucucugggauuaugcuaaacagagcaauuuc
....(((.((..(((((.(((((((((..(((.((((((((...............)))))))).))).))))))))).))))).)).)))......

Structure

--gaug   g  aa     u         CU   A        auguua 
      gcu ug  uuggc UAAUCUCAG  GGC ACUGUGag      a
      ||| ||  ||||| |||||||||  ||| ||||||||      u
      cga ac  aaucg auuaggguc  cug ugacacuc      a
cuuuaa   g  -a     u         -u   g        ccuuaa 

Annotation confidence Not enough data

Genome context

chr1: 638493848-638493944 [+]

Mature mdo-miR-216

• Accession: MIMAT0004131
• Description: Monodelphis domestica mdo-miR-216 mature miRNA
• Sequence: 19 - UAAUCUCAGCUGGCAACUGUG - 39
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72