Stem-loop mdo-mir-129

Accession

MI0005294

Description

Monodelphis domestica mdo-mir-129 precursor miRNA

Sequence

207436 reads, 3607 reads per million, 5 experiments

uggauCUUUUUGCGGUCUGGGCUUGCUguuccuuaaaucaguagucaggAAGCCCUUACCCCAAAAAGUAucua
((((((((((((.(((..((((((.(((((.((......)).)).))).))))))..))).))))))).)))))

Structure

     -       C   CU      G   -  c  ua 
uggau CUUUUUG GGU  GGGCUU CUg uu cu  a
||||| ||||||| |||  |||||| ||| || ||   
aucuA GAAAAAC CCA  CCCGAA gac ga ga  a
     U       C   UU      g   u  u  cu 

Annotation confidence High

Genome context

chr8: 188064158-188064231 [+]

Mature mdo-miR-129-5p

• Accession: MIMAT0004105
• Description: Monodelphis domestica mdo-miR-129-5p mature miRNA
• Sequence: 6 - CUUUUUGCGGUCUGGGCUUGCU - 27
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-129-3p

• Accession: MIMAT0026663
• Description: Monodelphis domestica mdo-miR-129-3p mature miRNA
• Sequence: 50 - AAGCCCUUACCCCAAAAAGUA - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45