Stem-loop mdo-mir-124a-2

Accession

MI0005289

Description

Monodelphis domestica mdo-mir-124a-2 precursor miRNA

Sequence

159064 reads, 4193.0 reads per million, 4 experiments

aucagagacucugucucucCGUGUUCACAGCGGACCUUGAUuuaaugucauacaauUAAGGCACGCGGUGAAUGCCAAgagcggagccugaaa
.((((.(.(((((.((((..((((((((.(((..((((((((...........))))))))..))).))))))))..))))))))))))))..

Structure

-a    a a     u    cC        A   GA        uaau 
  ucag g cucug cucu  GUGUUCAC GCG  CCUUGAUu    g
  |||| | ||||| ||||  |||||||| |||  ||||||||    u
  aguc c gaggc gagA  CGUAAGUG CGC  GGAAUuaa    c
aa    - -     -    AC        G   AC        caua 

Annotation confidence High

Genome context

ref|NC_077229.2|: 224281486-224281578 [-]

Mature mdo-miR-124a-5p

• Accession: MIMAT0026660
• Description: Monodelphis domestica mdo-miR-124a-5p mature miRNA
• Sequence: 20 - CGUGUUCACAGCGGACCUUGAU - 41
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-124a-3p

• Accession: MIMAT0004102
• Description: Monodelphis domestica mdo-miR-124a-3p mature miRNA
• Sequence: 57 - UAAGGCACGCGGUGAAUGCCAA - 78
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45