Stem-loop mdo-mir-22

Accession

MI0005276

Description

Monodelphis domestica mdo-mir-22 precursor miRNA

Sequence

87568 reads, 1455 reads per million, 5 experiments

ccgagccacagcAGUUCUUCAGUGGCGAGCUUUAugucuugucccagcuaAAGCUGCCAGUUGAAGAACUGCugagcucug
..((((..((((((((((((((((((.(((((((.(.((......)))))))))))))).)))))))))))))).))))..

Structure

cc    ca              -    G       u u  ug 
  gagc  cagcAGUUCUUCAG UGGC AGCUUUA g cu  u
  ||||  |||||||||||||| |||| ||||||| | ||   
  cucg  guCGUCAAGAAGUU ACCG UCGAAau c ga  c
gu    -a              G    -       - -  cc 

Annotation confidence Medium

Genome context

chr2: 517205525-517205605 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-22

Mature mdo-miR-22-3p

• Accession: MIMAT0004092
• Description: Monodelphis domestica mdo-miR-22-3p mature miRNA
• Sequence: 51 - AAGCUGCCAGUUGAAGAACUGC - 72
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-22-5p

• Accession: MIMAT0026651
• Description: Monodelphis domestica mdo-miR-22-5p mature miRNA
• Sequence: 13 - AGUUCUUCAGUGGCGAGCUUUA - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45