Stem-loop mdo-mir-21

Accession

MI0005275

Description

Monodelphis domestica mdo-mir-21 precursor miRNA

Literature search

2 open access papers mention mdo-mir-21
(4 sentences)

Sequence

473043 reads, 9358.0 reads per million, 5 experiments

ugucggaUAGCUUAUCAGACUGAUGUUGACuguuggaucucauggCAACAGCAGUCGAUGAGCUGUcugacauu
((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))..

Structure

--                A     A     A    ugg 
  ugucggaUAGCUUAUC GACUG UGUUG Cugu   a
  |||||||||||||||| ||||| ||||| ||||    
  acagucUGUCGAGUAG CUGAC ACAAC ggua   u
uu                -     G     -    cuc 

Annotation confidence High

Genome context

ref|NC_077228.1|: 179298248-179298321 [-]

Mature mdo-miR-21-5p

• Accession: MIMAT0004091
• Description: Monodelphis domestica mdo-miR-21-5p mature miRNA
• Sequence: 8 - UAGCUUAUCAGACUGAUGUUGAC - 30
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-21-3p

• Accession: MIMAT0026650
• Description: Monodelphis domestica mdo-miR-21-3p mature miRNA
• Sequence: 46 - CAACAGCAGUCGAUGAGCUGU - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45