Stem-loop mdo-mir-1-1

Accession

MI0005269

Description

Monodelphis domestica mdo-mir-1-1 precursor miRNA

Sequence

7312306 reads, 98609 reads per million, 5 experiments

accuacucagaguACAUACUUCUUUAUGUACCCAUAugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuugguaggug
(((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).))))))).

Structure

-       c                     AC     ug aca 
 accuacu agaguACAUACUUCUUUAUGU  CCAUA  a   u
 ||||||| |||||||||||||||||||||  |||||  |    
 uggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
g       u                     -A     cg aac 

Annotation confidence Not enough data

Genome context

chr3: 263364374-263364459 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-1-1

Mature mdo-miR-1-3p

• Accession: MIMAT0004085
• Description: Monodelphis domestica mdo-miR-1-3p mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGUAU - 74
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-1-1-5p

• Accession: MIMAT0026647
• Description: Monodelphis domestica mdo-miR-1-1-5p mature miRNA
• Sequence: 14 - ACAUACUUCUUUAUGUACCCAUA - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45