Stem-loop sme-mir-87b

Accession

MI0005155

Description

Schmidtea mediterranea sme-mir-87b precursor miRNA

Sequence

uucauugaugcguugaugcuUCAUUCGAAAUUUUGCUCAAAUCCauuuugauaauaauaauuuucgaugGUGAGCAAAGCUUCAAAUGAGauuucacggaauucgguc
...(((((..(((.((...((((((.(((.(((((((((...(((((..((.(((....))).)))))))))))))))).))).))))))...)))))....))))).

Structure

uuc     --ug   u  ugc      C   A         AAU     uu  u   a 
   auuga    cgu ga   uUCAUU GAA UUUUGCUCA   CCauu  ga aau a
   |||||    ||| ||   |||||| ||| |||||||||   |||||  || |||  
   uggcu    gca cu   GAGUAA CUU GAAACGAGU   Gguag  cu uua u
--c     uaag   -  uua      A   C         ---     --  u   a 

Annotation confidence Not enough data

Genome context

Contig17117: 10830-10937 [-]

Mature sme-miR-87b-5p

• Accession: MIMAT0012110
• Description: Schmidtea mediterranea sme-miR-87b-5p mature miRNA
• Sequence: 21 - UCAUUCGAAAUUUUGCUCAAAUCC - 44
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-87b-3p

• Accession: MIMAT0003990
• Description: Schmidtea mediterranea sme-miR-87b-3p mature miRNA
• Sequence: 70 - GUGAGCAAAGCUUCAAAUGAG - 90
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491