Stem-loop bta-mir-200a

Accession

MI0005037

Description

Bos taurus bta-mir-200a precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

174 open access papers mention bta-mir-200a
(749 sentences)

Sequence

3981403 reads, 1768.0 reads per million, 319 experiments

gggccucuguggaCAUCUUACCGGACAGUGCUGGAuuucucggcucgacucUAACACUGUCUGGUAACGAUGUUcaaaggugaccc
((((.(((.(((((((((((((((((((((.((((....(((...))).)))).))))))))))))).)))))))).))).).)))

Structure

   - c   g        -             C    uuuc   g 
ggg c ucu uggaCAUC UUACCGGACAGUG UGGA    ucg  
||| | ||| |||||||| ||||||||||||| ||||    ||| c
ccc g gga acUUGUAG AAUGGUCUGUCAC AUcu    agc  
   a u   a        C             A    ---c   u 

Annotation confidence High

Genome context

16: 51322680-51322765 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-200a

Mature bta-miR-200a-5p

• Accession: MIMAT0060959
• Description: Bos taurus bta-miR-200a-5p mature miRNA
• Sequence: 14 - CAUCUUACCGGACAGUGCUGGA - 35
• Evidence: experimental ; cloned [1]

Mature bta-miR-200a-3p

• Accession: MIMAT0003822
• Description: Bos taurus bta-miR-200a-3p mature miRNA
• Sequence: 52 - UAACACUGUCUGGUAACGAUGUU - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43