Stem-loop bta-mir-142

Accession

MI0005011

Description

Bos taurus bta-mir-142 precursor miRNA mir-142

Gene
family

RF01896; mir-142

Literature search

16 open access papers mention bta-mir-142
(76 sentences)

Sequence

304948 reads, 4388 reads per million, 75 experiments

gacagugcagucaccCAUAAAGUAGAAAGCACUACuaacagcacuggaggguguAGUGUUUCCUACUUUAUGGAUGaguguacugug
.((((((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).)))))))).

Structure

g        g   c           A         uaa ag a 
 acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu aGU GGUAUUUCAUC UUUGUGAug   g  g u
g        g   A           C         -ug ga g 

Annotation confidence Not enough data

Comments

In addition to the mature miR-142 sequence shown here, Gu et al. also cloned the offset sequence CCCAUAAAGUAGAAAGCACUA just once [2]. This sequence aligns with that cloned in chicken (MIR:MI0001281).

Genome context

chr19: 9627413-9627499 [-]

Mature bta-miR-142-5p

• Accession: MIMAT0003790
• Description: Bos taurus bta-miR-142-5p mature miRNA
• Sequence: 16 - CAUAAAGUAGAAAGCACUAC - 35
• Evidence: experimental ; cloned [2]

Mature bta-miR-142-3p

• Accession: MIMAT0003791
• Description: Bos taurus bta-miR-142-3p mature miRNA
• Sequence: 55 - AGUGUUUCCUACUUUAUGGAUG - 76
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988