Stem-loop dre-mir-731

Accession

MI0004776

Description

Danio rerio dre-mir-731 precursor miRNA mir-731

Gene
family

RF03622; mir-731

Literature search

3 open access papers mention dre-mir-731
(10 sentences)

Sequence

660858 reads, 1288.0 reads per million, 266 experiments

ugaugcugaucuggAAUGACACGUUUUCUCCCGGAUCGccagaaauauguuucgcCACCGGGAACUUCGUGUCAGCCAagauuggcauca
((((((((((((((..(((((((.....((((((...((..((((....))))))..))))))....))))))).)).))))))))))))

Structure

            -  AA       UUUUC      AUC  ca    u 
ugaugcugaucu gg  UGACACG     UCCCGG   Gc  gaaa a
|||||||||||| ||  |||||||     ||||||   ||  ||||  
acuacgguuaga CC  ACUGUGC     AGGGCC   cg  cuuu u
            A  -G       -UUCA      -AC  --    g 

Annotation confidence High

Genome context

chr8: 26082534-26082623 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-731

Mature dre-miR-731-5p

• Accession: MIMAT0003761
• Description: Danio rerio dre-miR-731-5p mature miRNA
• Sequence: 15 - AAUGACACGUUUUCUCCCGGAUCG - 38
• Evidence: experimental ; cloned [1], Northern [1]

Mature dre-miR-731-3p

• Accession: MIMAT0060904
• Description: Danio rerio dre-miR-731-3p mature miRNA
• Sequence: 56 - CACCGGGAACUUCGUGUCAGCCA - 78
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16698962
   Cloning and expression of new microRNAs from zebrafish
   "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
   "Nucleic Acids Res (2006) 34:2558-2569