Stem-loop bta-mir-199a-1

Accession

MI0004758

Description

Bos taurus bta-mir-199a-1 precursor miRNA mir-199

Gene
family

RF00144; mir-199

Literature search

24 open access papers mention bta-mir-199a-1
(81 sentences)

Sequence

309383 reads, 3030 reads per million, 67 experiments

uggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugccguuguACAGUAGUCUGCACAUUGGUUAgacugggcaaggg
.................(((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))).

Structure

uggaagcuucuggagau   -    c   gcC       U        C   U  --  ac 
                 ccu gcuc guc   CCAGUGU CAGACUAC UGU ca  gg  a
                 ||| |||| |||   ||||||| |||||||| ||| ||  ||   
                 gga cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
----------------g   a    u   AUU       C        -   u  ug  gu 

Annotation confidence Medium

Genome context

chr16: 40646156-40646259 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-199a-1

Mature bta-miR-199a-5p

• Accession: MIMAT0003544
• Description: Bos taurus bta-miR-199a-5p mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUU - 52
• Evidence: experimental ; cloned [1-2]

Mature bta-miR-199a-3p

• Accession: MIMAT0003746
• Description: Bos taurus bta-miR-199a-3p mature miRNA
• Sequence: 70 - ACAGUAGUCUGCACAUUGGUUA - 91
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90