Stem-loop bta-mir-145

Accession

MI0004756

Description

Bos taurus bta-mir-145 precursor miRNA mir-145

Gene
family

RF00675; mir-145

Literature search

19 open access papers mention bta-mir-145
(53 sentences)

Sequence

209277 reads, 1997 reads per million, 67 experiments

caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUuagaugcuaagauggggauuccuggaaauacuguucuugaggucaugguu
.(((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))).

Structure

c   u  u     c  UC    U  C            uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 

Annotation confidence High

Genome context

chr7: 63080500-63080587 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-145

Mature bta-miR-145

• Accession: MIMAT0003542
• Description: Bos taurus bta-miR-145 mature miRNA
• Sequence: 16 - GUCCAGUUUUCCCAGGAAUCCCU - 38
• Evidence: experimental ; cloned [1-3]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343