miRBase entry: mmu-mir-450b

Stem-loop mmu-mir-450b


Accession
MI0004705
Symbol
MGI: Mir450b
Description
Mus musculus mmu-mir-450b precursor miRNA mir-450
Gene
family?
RF00708; mir-450

Literature search
7 open access papers mention mmu-mir-450b
(16 sentences)

Sequence

21738 reads, 174 reads per million, 102 experiments
gauacagaauuauUUUUGCAGUAUGUUCCUGAAUAcauaacauaagcguAUUGGGAACAUUUUGCAUGCAUaauuuuguauc
(((((((((((((...(((((.((((((((.(((((...........))))))))))))).)))))...)))))))))))))

Structure
             UUU     U        G     auaa 
gauacagaauuau   UGCAG AUGUUCCU AAUAc    c
|||||||||||||   ||||| |||||||| |||||    a
cuauguuuuaaUA   ACGUU UACAAGGG UUAug    u
             CGU     U        -     cgaa 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chrX: 53047997-53048078 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from mmu-mir-450b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-450b-5p

Accession MIMAT0003511
Description Mus musculus mmu-miR-450b-5p mature miRNA
Sequence 14 - UUUUGCAGUAUGUUCCUGAAUA - 35
Evidence experimental
MPSS [1], cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-450b-3p

Accession MIMAT0003512
Description Mus musculus mmu-miR-450b-3p mature miRNA
Sequence 50 - AUUGGGAACAUUUUGCAUGCAU - 71
Evidence experimental
MPSS [1], cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771