Stem-loop mmu-mir-708

Accession

MI0004692

Symbol

MGI: Mir708

Description

Mus musculus mmu-mir-708 precursor miRNA mir-708

Gene
family

RF00917; mir-708

Literature search

28 open access papers mention mmu-mir-708
(210 sentences)

Sequence

68074 reads, 459 reads per million, 88 experiments

cuguguuugaaauggggacugcccucAAGGAGCUUACAAUCUAGCUGGGgguagaugacuugcacuugaacaCAACUAGACUGUGAGCUUCUAGagggcaggggccuua
.............(((..((((((((.(((((((((((.(((((.((.(..(((.((.....)).)))..).)).))))).))))))))))).))))))))...)))..

Structure

cuguguuugaaau   -ga        A           A     C  G gg   a  a 
             ggg   cugcccuc AGGAGCUUACA UCUAG UG G  uag ug c
             |||   |||||||| ||||||||||| ||||| || |  ||| || u
             ucc   gacgggaG UCUUCGAGUGU AGAUC AC c  guu ac u
-----------au   ggg        A           C     A  a aa   c  g 

Annotation confidence Medium

Genome context

chr7: 96249424-96249532 [+]

Mature mmu-miR-708-5p

• Accession: MIMAT0004828
• Description: Mus musculus mmu-miR-708-5p mature miRNA
• Sequence: 27 - AAGGAGCUUACAAUCUAGCUGGG - 49
• Evidence: experimental ; cloned [3], Illumina [4-5]

Mature mmu-miR-708-3p

• Accession: MIMAT0003498
• Description: Mus musculus mmu-miR-708-3p mature miRNA
• Sequence: 73 - CAACUAGACUGUGAGCUUCUAG - 94
• Evidence: experimental ; MPSS [1], miRAP-cloned [2], cloned [3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771


5. PubMed ID: 16973894
   Mouse microRNA profiles determined with a new and sensitive cloning method
   "Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H"
   "Nucleic Acids Res (2006) 34:e115