Stem-loop mmu-mir-499

Accession

MI0004676

Symbol

MGI: Mir499

Description

Mus musculus mmu-mir-499 precursor miRNA mir-499

Gene
family

RF00745; mir-499

Literature search

66 open access papers mention mmu-mir-499
(607 sentences)

Sequence

16038 reads, 113 reads per million, 79 experiments

gggugggcagcugUUAAGACUUGCAGUGAUGUUUagcuccucugcauguGAACAUCACAGCAAGUCUGUGCUgcugccu
....(((((((.((..((((((((.((((((((((((......))...)))))))))).))))))))..)).)))))))

Structure

gggu       u  UA        A          ---  uc 
    gggcagc gU  AGACUUGC GUGAUGUUUa   gc  c
    ||||||| ||  |||||||| ||||||||||   ||   
    uccgucg CG  UCUGAACG CACUACAAGu   cg  u
----       U  UG        A          gua  uc 

Annotation confidence High

Genome context

chr2: 155622880-155622958 [+]

Mature mmu-miR-499-5p

• Accession: MIMAT0003482
• Description: Mus musculus mmu-miR-499-5p mature miRNA
• Sequence: 14 - UUAAGACUUGCAGUGAUGUUU - 34
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

Mature mmu-miR-499-3p

• Accession: MIMAT0017254
• Description: Mus musculus mmu-miR-499-3p mature miRNA
• Sequence: 50 - GAACAUCACAGCAAGUCUGUGCU - 72
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771