Stem-loop mmu-mir-449c

Accession

MI0004645

Symbol

MGI: Mir449c

Description

Mus musculus mmu-mir-449c precursor miRNA mir-449

Gene
family

RF00711; mir-449

Literature search

48 open access papers mention mmu-mir-449c
(285 sentences)

Sequence

3221 reads, 72 reads per million, 75 experiments

aggaugaagugugggugugucaggcAGGCAGUGCAUUGCUAGCUGGcuguuagaacuuuaucccaaCAGUUGCUAGCUGCACUACCCUcugcugcacucagaagcaugc
.(.(((.....((((((((.((((..((.((((((..((((((.(((((((.((......))..))))))))))))))))))).)).)))).))))))))....))).)

Structure

a g   aagug        u    cA  C      UU      U       -a  ac 
 g aug     ugggugug cagg  GG AGUGCA  GCUAGC GGcuguu  ga  u
 | |||     |||||||| ||||  || ||||||  |||||| |||||||  ||   
 c uac     acucacgu gucU  CC UCACGU  CGAUCG UUGACaa  cu  u
- g   -gaag        c    -C  A      --      -       cc  au 

Annotation confidence Not enough data

Genome context

chr13: 113035983-113036091 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mmu-mir-449c

Mature mmu-miR-449c-5p

• Accession: MIMAT0003460
• Description: Mus musculus mmu-miR-449c-5p mature miRNA
• Sequence: 26 - AGGCAGUGCAUUGCUAGCUGG - 46
• Evidence: experimental ; MPSS [1], Illumina [2]

Mature mmu-miR-449c-3p

• Accession: MIMAT0022715
• Description: Mus musculus mmu-miR-449c-3p mature miRNA
• Sequence: 67 - CAGUUGCUAGCUGCACUACCCU - 88
• Evidence: not_experimental

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771