Stem-loop mmu-mir-1298

Accession

MI0004300

Symbol

MGI: Mir1298

Description

Mus musculus mmu-mir-1298 precursor miRNA mir-1298

Gene
family

RF03404; mir-1298

Literature search

4 open access papers mention mmu-mir-1298
(6 sentences)

Sequence

14286 reads, 65 reads per million, 33 experiments

gagggguuaagagUUCAUUCGGCUGUCCAGAUGUAcccaaguacccuguuauuuggcaauacauaCAUCUGGGCAACUGAUUGAACUuuucgcuucuc
(((((((.(((((((((.((((.((((((((((((.(((((((......))))))).......)))))))))))).)))).))))))))).)))))))

Structure

       u         U    C            ------c       cc 
gaggggu aagagUUCA UCGG UGUCCAGAUGUA       ccaagua  c
||||||| ||||||||| |||| ||||||||||||       |||||||   
cucuucg uuuUCAAGU AGUC ACGGGUCUACau       gguuuau  u
       c         U    A            acauaac       ug 

Annotation confidence Medium

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

chrX: 147064905-147065002 [+]

Mature mmu-miR-1298-5p

• Accession: MIMAT0014809
• Description: Mus musculus mmu-miR-1298-5p mature miRNA
• Sequence: 14 - UUCAUUCGGCUGUCCAGAUGUA - 35
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-1298-3p

• Accession: MIMAT0014810
• Description: Mus musculus mmu-miR-1298-3p mature miRNA
• Sequence: 66 - CAUCUGGGCAACUGAUUGAACU - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298