Stem-loop mmu-mir-770

Accession

MI0004203

Symbol

MGI: Mir770

Description

Mus musculus mmu-mir-770 precursor miRNA mir-770

Gene
family

RF00888; mir-770

Literature search

7 open access papers mention mmu-mir-770
(104 sentences)

Sequence

43116 reads, 77 reads per million, 56 experiments

gccaccuucugugcccccAGCACCACGUGUCUGGGCCACGugagcaacgccaCGUGGGCCUGACGUGGAGCUGGggccgcaggggucugauggc
(((((((((((((.(((((((.((((((....((.(((((((.((...))))))))).))..)))))).))))))).))))))))...).))))

Structure

    - ---        c       A      GUCU  G       a  a 
gcca c   cuucugug ccccAGC CCACGU    GG CCACGug gc  
|||| |   |||||||| ||||||| ||||||    || ||||||| || a
cggu g   ggggacgc ggGGUCG GGUGCA    CC GGUGCac cg  
    a ucu        c       A      --GU  G       -  c 

Annotation confidence High

Genome context

chr12: 109563692-109563785 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-770

Mature mmu-miR-770-5p

• Accession: MIMAT0004822
• Description: Mus musculus mmu-miR-770-5p mature miRNA
• Sequence: 19 - AGCACCACGUGUCUGGGCCACG - 40
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-770-3p

• Accession: MIMAT0003891
• Description: Mus musculus mmu-miR-770-3p mature miRNA
• Sequence: 53 - CGUGGGCCUGACGUGGAGCUGG - 74
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298