Stem-loop mmu-mir-551b

Accession

MI0004131

Symbol

MGI: Mir551b

Description

Mus musculus mmu-mir-551b precursor miRNA mir-551

Gene
family

RF00892; mir-551

Literature search

6 open access papers mention mmu-mir-551b
(153 sentences)

Sequence

4838 reads, 95 reads per million, 37 experiments

gugcucuuguggcccauGAAAUCAAGCUUGGGUGAGACCUggugcagaacaggaagGCGACCCAUACUUGGUUUCAGuggcugcaagaaugacugcau
((((((((((((((..((((((((((..(((((....((((........))))......)))))..))))))))))..))))))))))......))))

Structure

    ------          ca          CU     --GAGA    gug 
gugc      ucuuguggcc  uGAAAUCAAG  UGGGU      CCUg   c
||||      ||||||||||  ||||||||||  |||||      ||||    
uacg      agaacgucgg  ACUUUGGUUC  ACCCA      ggac   a
    ucagua          uG          AU     GCGgaa    aag 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context

chr3: 29416823-29416920 [+]

Mature mmu-miR-551b-5p

• Accession: MIMAT0017236
• Description: Mus musculus mmu-miR-551b-5p mature miRNA
• Sequence: 18 - GAAAUCAAGCUUGGGUGAGACCU - 40
• Evidence: experimental ; Illumina [4]

Mature mmu-miR-551b-3p

• Accession: MIMAT0003890
• Description: Mus musculus mmu-miR-551b-3p mature miRNA
• Sequence: 57 - GCGACCCAUACUUGGUUUCAG - 77
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771