Stem-loop rno-mir-497

Accession

MI0003724

Description

Rattus norvegicus rno-mir-497 precursor miRNA

Literature search

20 open access papers mention rno-mir-497
(166 sentences)

Sequence

400056 reads, 335 reads per million, 489 experiments

cCAGCAGCACACUGUGGUUUGUAcggcacuguggccacguCCAAACCACACUGUGGUGUUAGAgcgagg
..((((.((((.(((((((((.(((((......)))..)).))))))))).)))).)))).........

Structure

-------cC    G    C         U  --   ac 
         AGCA CACA UGUGGUUUG Ac  ggc  u
         |||| |||| ||||||||| ||  |||   
         UUGU GUGU ACACCAAAC ug  ccg  g
ggagcgAGA    G    C         C  ca   gu 

Annotation confidence Not enough data

Genome context

chr10: 56844977-56845045 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-497

Mature rno-miR-497-5p

• Accession: MIMAT0003383
• Description: Rattus norvegicus rno-miR-497-5p mature miRNA
• Sequence: 2 - CAGCAGCACACUGUGGUUUGUA - 23
• Evidence: experimental ; cloned [1-2], Northern [1], SOLiD [3]

Mature rno-miR-497-3p

• Accession: MIMAT0017230
• Description: Rattus norvegicus rno-miR-497-3p mature miRNA
• Sequence: 41 - CCAAACCACACUGUGGUGUUAGA - 63
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249