Stem-loop rno-mir-664-1

Accession

MI0003722

Description

Rattus norvegicus rno-mir-664-1 precursor miRNA

Literature search

5 open access papers mention rno-mir-664-1
(15 sentences)

Sequence

34523 reads, 26 reads per million, 471 experiments

CUGGCUGGGGAAAAAGAUUGGauagaaaacauuauucUAUUCAUUUACUCCCCAGCCUA
..(((((((((....((.(((((((((.......))))))))).))..)))))))))..

Structure

CU         AAAA  U         aa 
  GGCUGGGGA    GA UGGauagaa  c
  |||||||||    || |||||||||  a
  CCGACCCCU    UU ACUUAUcuu  u
AU         --CA  U         au 

Annotation confidence Not enough data

Genome context

chr18: 47488028-47488086 [+]

Mature rno-miR-664-1-5p

• Accession: MIMAT0017228
• Description: Rattus norvegicus rno-miR-664-1-5p mature miRNA
• Sequence: 1 - CUGGCUGGGGAAAAAGAUUGG - 21
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-664-3p

• Accession: MIMAT0003382
• Description: Rattus norvegicus rno-miR-664-3p mature miRNA
• Sequence: 38 - UAUUCAUUUACUCCCCAGCCUA - 59
• Evidence: experimental ; cloned [1], Northern [1], SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249