Stem-loop rno-mir-381

Accession

MI0003546

Description

Rattus norvegicus rno-mir-381 precursor miRNA

Literature search

47 open access papers mention rno-mir-381
(164 sentences)

Sequence

660689 reads, 620.0 reads per million, 489 experiments

AGCGAGGUUGCCCUUUGUAUAUUcgguuuauugacaugggaUAUACAAGGGCAAGCUCUCU
((.(((.((((((((.((((((((.((........)).)))))))))))))))).))).))

Structure

  C   G        U        g  uua 
AG GAG UUGCCCUU GUAUAUUc gu   u
|| ||| |||||||| |||||||| ||    
UC CUC AACGGGAA CAUAUagg ua   u
  U   G        -        g  cag 

Annotation confidence High

Genome context

chr6: 133876615-133876675 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from rno-mir-381

Mature rno-miR-381-5p

• Accession: MIMAT0017220
• Description: Rattus norvegicus rno-miR-381-5p mature miRNA
• Sequence: 1 - AGCGAGGUUGCCCUUUGUAUAUU - 23
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-381-3p

• Accession: MIMAT0003199
• Description: Rattus norvegicus rno-miR-381-3p mature miRNA
• Sequence: 42 - UAUACAAGGGCAAGCUCUCU - 61
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267