Stem-loop rno-mir-376a

Accession

MI0003545

Description

Rattus norvegicus rno-mir-376a precursor miRNA

Literature search

9 open access papers mention rno-mir-376a
(72 sentences)

Sequence

23710 reads, 26 reads per million, 332 experiments

ugauauuuaaaaGGUAGAUUCUCCUUCUAUGAGuacaauauuaaugacuaAUCGUAGAGGAAAAUCCACGUuuucaguauca
(((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).)))))))

Structure

       u    G  A    C    U      Guacaaua 
ugauauu aaaa GU GAUU UCCU CUAUGA        u
||||||| |||| || |||| |||| ||||||        u
acuauga uuuU CA CUAA AGGA GAUGCU        a
       c    G  C    A    -      Aaucagua 

Annotation confidence High

Genome context

chr6: 133873605-133873686 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-376a

Mature rno-miR-376a-5p

• Accession: MIMAT0003197
• Description: Rattus norvegicus rno-miR-376a-5p mature miRNA
• Sequence: 13 - GGUAGAUUCUCCUUCUAUGAG - 33
• Evidence: experimental ; SOLiD [3]

Mature rno-miR-376a-3p

• Accession: MIMAT0003198
• Description: Rattus norvegicus rno-miR-376a-3p mature miRNA
• Sequence: 51 - AUCGUAGAGGAAAAUCCACGU - 71
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267