Stem-loop mmu-mir-450a-2

Accession

MI0003537

Symbol

MGI: Mir450-2

Description

Mus musculus mmu-mir-450a-2 precursor miRNA mir-450

Gene
family

RF00708; mir-450

Literature search

8 open access papers mention mmu-mir-450a-2
(84 sentences)

Sequence

26572 reads, 134 reads per million, 100 experiments

gaacuauUUUUGCGAUGUGUUCCUAAUAUguacuaugaguauAUUGGGGAUGCUUUGCAUUCAUgguuc
(((((((...(((((.(((((((((..(((((((...)))))))))))))))).)))))...)))))))

Structure

       UUU     U         AU       a 
gaacuau   UGCGA GUGUUCCUA  AUguacu  
|||||||   ||||| |||||||||  ||||||| u
cuuggUA   ACGUU CGUAGGGGU  UAuauga  
       CUU     U         --       g 

Annotation confidence High

Genome context

chrX: 53048299-53048367 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from mmu-mir-450a-2

Mature mmu-miR-450a-5p

• Accession: MIMAT0001546
• Description: Mus musculus mmu-miR-450a-5p mature miRNA
• Sequence: 8 - UUUUGCGAUGUGUUCCUAAUAU - 29
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-450a-2-3p

• Accession: MIMAT0004789
• Description: Mus musculus mmu-miR-450a-2-3p mature miRNA
• Sequence: 43 - AUUGGGGAUGCUUUGCAUUCAU - 64
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267