Stem-loop rno-mir-483

Accession

MI0003485

Description

Rattus norvegicus rno-mir-483 precursor miRNA

Literature search

12 open access papers mention rno-mir-483
(204 sentences)

Sequence

3868 reads, 5 reads per million, 245 experiments

gagggggAAGACGGGAGAAGAGAAGGGAGugguuuuugggugccuCACUCCUCCCCUCCCGUCUUGUucucuc
(((((((((((((((((..((....((((((((........)))..)))))))..)))))))))).)))))))

Structure

       -          AA  GAAG     --   uuu 
gaggggg AAGACGGGAG  GA    GGAGu  ggu   u
||||||| ||||||||||  ||    |||||  |||    
cucucuU UUCUGCCCUC  CU    CCUCA  ccg   g
       G          CC  ----     Cu   ugg 

Annotation confidence High

Genome context

chr1: 215832088-215832160 [-]

Mature rno-miR-483-5p

• Accession: MIMAT0017201
• Description: Rattus norvegicus rno-miR-483-5p mature miRNA
• Sequence: 8 - AAGACGGGAGAAGAGAAGGGAG - 29
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-483-3p

• Accession: MIMAT0003121
• Description: Rattus norvegicus rno-miR-483-3p mature miRNA
• Sequence: 46 - CACUCCUCCCCUCCCGUCUUGU - 67
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249