Stem-loop tni-mir-27c

Accession

MI0003432

Description

Tetraodon nigroviridis tni-mir-27c precursor miRNA

Literature search

1 open access papers mention tni-mir-27c
(1 sentences)

Sequence

4533 reads, 166.0 reads per million, 3 experiments

ggcugugcggcggcAGGACUUAACCCACAUGUGAACAgugagugugccgugUUCACAGUGGUUAAGUUCUGCcgcc
........(((((((((((((((((.((.((((((((..(......)..)))))))))))))))))))))))))))

Structure

ggcugugc                 C  A        gu ag 
        ggcggcAGGACUUAACC AC UGUGAACA  g  u
        ||||||||||||||||| || ||||||||  |   
        ccgcCGUCUUGAAUUGG UG ACACUUgu  c  g
--------                 -  -        gc gu 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

3: 8970174-8970249 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-27c

Mature tni-miR-27c-5p

• Accession: MIMAT0052981
• Description: Tetraodon nigroviridis tni-miR-27c-5p mature miRNA
• Sequence: 15 - AGGACUUAACCCACAUGUGAACA - 37
• Evidence: not_experimental

Mature tni-miR-27c-3p

• Accession: MIMAT0003078
• Description: Tetraodon nigroviridis tni-miR-27c-3p mature miRNA
• Sequence: 52 - UUCACAGUGGUUAAGUUCUGC - 72
• Evidence: not_experimental

References