Stem-loop fru-mir-122

Accession

MI0003315

Description

Fugu rubripes fru-mir-122 precursor miRNA

Literature search

3 open access papers mention fru-mir-122
(15 sentences)

Sequence

42706 reads, 572.0 reads per million, 12 experiments

agcuaUGGAGUGUGACAAUGGUGUUUGuuuccuuucuuucaAACGCCAUUAUCACACUAAAUagcu
((((((..(((((((.(((((((((((............))))))))))).)))))))..))))))

Structure

      GG       C           uuucc 
agcuaU  AGUGUGA AAUGGUGUUUG     u
||||||  ||||||| |||||||||||      
ucgaUA  UCACACU UUACCGCAAac     u
      AA       A           uuucu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042290.1|: 5514257-5514322 [+]

Mature fru-miR-122-5p

• Accession: MIMAT0002991
• Description: Fugu rubripes fru-miR-122-5p mature miRNA
• Sequence: 6 - UGGAGUGUGACAAUGGUGUUUG - 27
• Evidence: not_experimental

Mature fru-miR-122-3p

• Accession: MIMAT0052863
• Description: Fugu rubripes fru-miR-122-3p mature miRNA
• Sequence: 42 - AACGCCAUUAUCACACUAAAU - 62
• Evidence: not_experimental

References