Accession
MI0003286
Description
Tetraodon nigroviridis
tni-mir-193 precursor miRNA
Sequence
495
reads,
18.0
reads per million, 3 experiments
cagaagcUGGGUCUUUGCGGGCAAGGUGAguccucaguuuguucAACUGGCCUACAAAGUCCCAGUgucuggcucacgugacc
((((.((((((.(((((.((((.(((.....)))(((((.....))))))))).))))).)))))).))))............
((((.((((((.(((((.((((.(((.....)))(((((.....))))))))).))))).)))))).))))............
Structure
------------ a U C --------------A U
caga gcUGGG CUUUG GGGC AGG G
|||| |||||| ||||| |||| ||| A
gucu UGACCC GAAAC UCCG ucc g
ccagugcacucg g U A GUCAAcuuguuugac u
Annotation confidence
High
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
Un_random: 38919577-38919659 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-193
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature tni-miR-193-5p
| Accession | MIMAT0052951 |
| Description | Tetraodon nigroviridis tni-miR-193-5p mature miRNA |
| Sequence | 8 - UGGGUCUUUGCGGGCAAGGUGA - 29 |
| Evidence | not_experimental |
Mature tni-miR-193-3p
| Accession | MIMAT0002970 |
| Description | Tetraodon nigroviridis tni-miR-193-3p mature miRNA |
| Sequence | 45 - AACUGGCCUACAAAGUCCCAGU - 66 |
| Evidence | not_experimental |
References
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