Stem-loop fru-mir-193

Accession

MI0003285

Description

Fugu rubripes fru-mir-193 precursor miRNA

Sequence

1266 reads, 19.0 reads per million, 12 experiments

ugugucagaagcUGGGUCUUUGCGGGCAAGGUGAguccucaguuuguucAACUGGCCUACAAAGUCCCAGUcucuggcucacguaacc
((.((((((.((((((.(((((.((((.(((.....)))(((((.....))))))))).))))).)))))).)))))).)).......

Structure

-------  u      a      U     C    --------------A   U 
       ug gucaga gcUGGG CUUUG GGGC               AGG G
       || |||||| |||||| ||||| ||||               ||| A
       ac cggucu UGACCC GAAAC UCCG               ucc g
ccaaugc  u      c      U     A    GUCAAcuuguuugac   u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042301.1|: 2641421-2641508 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-193

Mature fru-miR-193-5p

• Accession: MIMAT0052854
• Description: Fugu rubripes fru-miR-193-5p mature miRNA
• Sequence: 13 - UGGGUCUUUGCGGGCAAGGUGA - 34
• Evidence: not_experimental

Mature fru-miR-193-3p

• Accession: MIMAT0002969
• Description: Fugu rubripes fru-miR-193-3p mature miRNA
• Sequence: 50 - AACUGGCCUACAAAGUCCCAGU - 71
• Evidence: not_experimental

References