Stem-loop fru-mir-199-3

Accession

MI0003275

Description

Fugu rubripes fru-mir-199-3 precursor miRNA

Sequence

4820759 reads, 61884.0 reads per million, 12 experiments

cuccccguccugccugCCCAGUGUUCAGACUACCUGUUCaucagacuaaagcugaACAGUAGUCUGCACAUUGGUUaagcuggguugggacacacacgc
.((((..(((.((.((.(((((((.((((((((.((((((.(........).)))))))))))))).))))))).)).)).)))..)))).........

Structure

--------c    cg   u  c  C       U        C      u aga 
         uccc  ucc gc ug CCAGUGU CAGACUAC UGUUCa c   c
         ||||  ||| || || ||||||| |||||||| |||||| |    
         aggg  ggg cg aU GGUUACA GUCUGAUG ACAagu g   u
cgcacacac    uu   u  a  U       C        -      c aaa 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042289.1|: 9726651-9726749 [-]

Mature fru-miR-199-5p

• Accession: MIMAT0002959
• Description: Fugu rubripes fru-miR-199-5p mature miRNA
• Sequence: 17 - CCCAGUGUUCAGACUACCUGUUC - 39
• Evidence: not_experimental

Mature fru-miR-199-3p

• Accession: MIMAT0052848
• Description: Fugu rubripes fru-miR-199-3p mature miRNA
• Sequence: 56 - ACAGUAGUCUGCACAUUGGUU - 76
• Evidence: not_experimental

References