Accession
MI0003228
Description
Tetraodon nigroviridis
tni-mir-23a-2 precursor miRNA
Sequence
33517
reads,
1229.0
reads per million, 3 experiments
agcuggagGGAUUCCUGGCAGAGUGAUUUggcugugauguaauguaaAUCACAUUGCCAGGGAUUUCCAaccagcu
((((((.((((((((((((((.((((((((((......))....)))))))).))))))))))))))...))))))
((((((.((((((((((((((.((((((((((......))....)))))))).))))))))))))))...))))))
Structure
--a A ---- ug
agcugg gGGAUUCCUGGCAG GUGAUUUg gc u
|||||| |||||||||||||| |||||||| ||
ucgacc CUUUAGGGACCGUU CACUAaau ug g
aAC A guaa ua
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
15_random: 3094555-3094630 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from tni-mir-23a-2
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature tni-miR-23a-2-5p
| Accession | MIMAT0052980 |
| Description | Tetraodon nigroviridis tni-miR-23a-2-5p mature miRNA |
| Sequence | 9 - GGAUUCCUGGCAGAGUGAUUU - 29 |
| Evidence | not_experimental |
Mature tni-miR-23a-3p
| Accession | MIMAT0002913 |
| Description | Tetraodon nigroviridis tni-miR-23a-3p mature miRNA |
| Sequence | 48 - AUCACAUUGCCAGGGAUUUCCA - 69 |
| Evidence | not_experimental |
References
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