Stem-loop ptr-mir-24-2

Accession

MI0003050

Description

Pan troglodytes ptr-mir-24-2 precursor miRNA

Literature search

1 open access papers mention ptr-mir-24-2
(15 sentences)

Sequence

101622 reads, 906.0 reads per million, 24 experiments

cucugccucccGUGCCUACUGAGCUGAAACACAguugguuuguguacacUGGCUCAGUUCAGCAGGAACAGgg
(((((..(((.((....(((((((((..((((((.....))))))....)))))))))...)).))).)))))

Structure

     cc   c  GCCU         --AA      u 
cucug  ucc GU    ACUGAGCUG    ACACAg u
|||||  ||| ||    |||||||||    |||||| g
ggGAC  AGG CG    UGACUCGGU    uguguu g
     -A   A  -ACU         caca      u 

Annotation confidence Medium

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 14579133-14579205 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-24-2

Mature ptr-miR-24-2-5p

• Accession: MIMAT0052248
• Description: Pan troglodytes ptr-miR-24-2-5p mature miRNA
• Sequence: 12 - GUGCCUACUGAGCUGAAACACA - 33
• Evidence: not_experimental

Mature ptr-miR-24-3p

• Accession: MIMAT0002751
• Description: Pan troglodytes ptr-miR-24-3p mature miRNA
• Sequence: 50 - UGGCUCAGUUCAGCAGGAACAG - 71
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24