Stem-loop ptr-mir-23a

Accession

MI0003048

Description

Pan troglodytes ptr-mir-23a precursor miRNA

Literature search

8 open access papers mention ptr-mir-23a
(11 sentences)

Sequence

50038 reads, 463.0 reads per million, 24 experiments

ggccggcuGGGGUUCCUGGGGAUGGGAUUUgcuuccugucacaaAUCACAUUGCCAGGGAUUUCCAaccgacc
((.(((.((((((((((((.((((.((((((..........)))))).)))).))))))).))))).))).))

Structure

  c   c     -       G    G      cuuc 
gg cgg uGGGG UUCCUGG GAUG GAUUUg    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc ACCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 14579433-14579505 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-23a

Mature ptr-miR-23a-5p

• Accession: MIMAT0052246
• Description: Pan troglodytes ptr-miR-23a-5p mature miRNA
• Sequence: 9 - GGGGUUCCUGGGGAUGGGAUUU - 30
• Evidence: not_experimental

Mature ptr-miR-23a-3p

• Accession: MIMAT0002749
• Description: Pan troglodytes ptr-miR-23a-3p mature miRNA
• Sequence: 45 - AUCACAUUGCCAGGGAUUUCCA - 66
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24