miRBase entry: mml-mir-19b-1

Stem-loop mml-mir-19b-1

Accession

MI0003005

Description

Macaca mulatta mml-mir-19b-1 precursor miRNA mir-19

Gene
family?

RF00245; mir-19

Literature search

3 open access papers mention mml-mir-19b-1
(5 sentences)

Sequence

291653 reads, 678.0 reads per million, 152 experiments

cacuguucuaugguuAGUUUUGCAGGUUUGCAUCCAGCUGugugauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugguagug
(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))

Structure

     uu                 -  -      UC    UGugu 
cacug  cuaugguuAGUUUUGCA GG UUUGCA  CAGC     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua

Annotation confidence High

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

17: 73152700-73152786 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mml-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mml-miR-19b-1-5p

Accession	MIMAT0061162
Description	Macaca mulatta mml-miR-19b-1-5p mature miRNA
Sequence	16 - AGUUUUGCAGGUUUGCAUCCAGCUG - 40
Evidence	experimental unknown

Mature mml-miR-19b-3p

Accession	MIMAT0002705
Description	Macaca mulatta mml-miR-19b-3p mature miRNA
Sequence	54 - UGUGCAAAUCCAUGCAAAACUGA - 76
Evidence	not_experimental
Database links
Predicted targets

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24