Stem-loop ptr-mir-30d

Accession

MI0002926

Description

Pan troglodytes ptr-mir-30d precursor miRNA

Literature search

5 open access papers mention ptr-mir-30d
(8 sentences)

Sequence

131002 reads, 1058.0 reads per million, 24 experiments

guuguUGUAAACAUCCCCGACUGGAAGCUguaagacacagcuaagCUUUCAGUCAGAUGUUUGCUgcuac
...((.(((((((((...(((((((((((..............))))))))))).))))))))).))...

Structure

guu  U         CCC           guaaga 
   gu GUAAACAUC   GACUGGAAGCU      c
   || |||||||||   |||||||||||       
   cg CGUUUGUAG   CUGACUUUCga      a
cau  U         --A           aucgac 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr8: 137277018-137277087 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-30d

Mature ptr-miR-30d-5p

• Accession: MIMAT0002617
• Description: Pan troglodytes ptr-miR-30d-5p mature miRNA
• Sequence: 6 - UGUAAACAUCCCCGACUGGAAGCU - 29
• Evidence: not_experimental

Mature ptr-miR-30d-3p

• Accession: MIMAT0052239
• Description: Pan troglodytes ptr-miR-30d-3p mature miRNA
• Sequence: 46 - CUUUCAGUCAGAUGUUUGCU - 65
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24