Stem-loop ptr-mir-30c-2

Accession

MI0002923

Description

Pan troglodytes ptr-mir-30c-2 precursor miRNA

Literature search

4 open access papers mention ptr-mir-30c-2
(8 sentences)

Sequence

21923 reads, 177.0 reads per million, 24 experiments

agauacUGUAAACAUCCUACACUCUCAGCUguggaaaguaagaaagCUGGGAGAAGGCUGUUUACUCUUucu
(((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))

Structure

   uacU       U   ACA         guggaa 
aga    GUAAACA CCU   CUCUCAGCU      a
|||    ||||||| |||   |||||||||       
ucu    CAUUUGU GGA   GAGGGUCga      g
   UUCU       C   --A         aagaau 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr6: 74025074-74025145 [-]

Mature ptr-miR-30c-5p

• Accession: MIMAT0002614
• Description: Pan troglodytes ptr-miR-30c-5p mature miRNA
• Sequence: 7 - UGUAAACAUCCUACACUCUCAGCU - 30
• Evidence: not_experimental

Mature ptr-miR-30c-2-3p

• Accession: MIMAT0052237
• Description: Pan troglodytes ptr-miR-30c-2-3p mature miRNA
• Sequence: 47 - CUGGGAGAAGGCUGUUUACUCUU - 69
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24