Stem-loop ptr-mir-197

Accession

MI0002909

Description

Pan troglodytes ptr-mir-197 precursor miRNA

Literature search

1 open access papers mention ptr-mir-197
(1 sentences)

Sequence

877 reads, 8.0 reads per million, 24 experiments

ggcugugcCGGGUAGAGAGGGCAGUGGGAGGUaagagcucuucacccUUCACCACCUUCUCCACCCAGCauggcc
((((((((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))))))))

Structure

        C    A       CA     A   -   a 
ggcugugc GGGU GAGAGGG  GUGGG GGU aag g
|||||||| |||| |||||||  ||||| ||| |||  
ccgguaCG CCCA CUCUUCC  CACUU cca uuc c
        A    C       AC     c   c   u 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 110101666-110101740 [+]

Mature ptr-miR-197-5p

• Accession: MIMAT0052236
• Description: Pan troglodytes ptr-miR-197-5p mature miRNA
• Sequence: 9 - CGGGUAGAGAGGGCAGUGGGAGGU - 32
• Evidence: not_experimental

Mature ptr-miR-197-3p

• Accession: MIMAT0002600
• Description: Pan troglodytes ptr-miR-197-3p mature miRNA
• Sequence: 48 - UUCACCACCUUCUCCACCCAGC - 69
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24