Stem-loop ppy-mir-219-1

Accession

MI0002886

Description

Pongo pygmaeus ppy-mir-219-1 precursor miRNA

Sequence

ccgccccgggccgcggcuccUGAUUGUCCAAACGCAAUUCUcgagucuauggccccggccgagaguugagucuggacgucccgagccgccgcccccaaaccucgagcggg
((((.(.((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).)))).........).)))).

Structure

-    c --------c    c       cU   U     A  G         a   uau 
 ccgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
 |||| |         |||| |||||||  ||| ||||| || ||||||||| |||   g
 ggcg g         cccg cgccgag  cug caggu ug guugagagc cgg   c
g    a cuccaaacc    c       cc   -     c  a         -   ccc 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

NW_002874576.1: 1044940-1045049 [+]

Mature ppy-miR-219

• Accession: MIMAT0002577
• Description: Pongo pygmaeus ppy-miR-219 mature miRNA
• Sequence: 21 - UGAUUGUCCAAACGCAAUUCU - 41
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24