Stem-loop ggo-mir-219

Accession

MI0002885

Description

Gorilla gorilla ggo-mir-219 precursor miRNA

Sequence

7551 reads, 523.0 reads per million, 4 experiments

ccgccccgggccgcggcuccUGAUUGUCCAAACGCAAUUCUcgagucuauggcuccggccgAGAGUUGAGUCUGGACGUCCCGagccgccgcccccaaaccucgagcggg
((((.(.((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).)))).........).)))).

Structure

-    c --------c    c       cU   U     A  G         a   uau 
 ccgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
 |||| |         |||| |||||||  ||| ||||| || ||||||||| |||   g
 ggcg g         cccg cgccgaG  CUG CAGGU UG GUUGAGAgc cgg   c
g    a cuccaaacc    c       CC   -     C  A         -   ccu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr6: 33867669-33867778 [+]

Mature ggo-miR-219-5p

• Accession: MIMAT0002576
• Description: Gorilla gorilla ggo-miR-219-5p mature miRNA
• Sequence: 21 - UGAUUGUCCAAACGCAAUUCU - 41
• Evidence: not_experimental

Mature ggo-miR-219-3p

• Accession: MIMAT0061267
• Description: Gorilla gorilla ggo-miR-219-3p mature miRNA
• Sequence: 62 - AGAGUUGAGUCUGGACGUCCCG - 83
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24