Stem-loop ptr-mir-218-2

Accession

MI0002879

Description

Pan troglodytes ptr-mir-218-2 precursor miRNA

Sequence

974 reads, 11.0 reads per million, 17 experiments

gaccagucgcugcggggcuuuccuUUGUGCUUGAUCUAACCAUGUgguggaacgauggaaacggaacAUGGUUCUGUCAAGCACCGCGgaaagcaccgugcucuccugca
...(((..((.((((.(((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).))))))....)))..

Structure

gac   --uc  u    g       uUU         CU        gg  gaacg 
   cag    gc gcgg gcuuucc   GUGCUUGAU  AACCAUGU  ug     a
   |||    || |||| |||||||   |||||||||  ||||||||  ||      
   guc    cg ugcc cgaaagG   CACGAACUG  UUGGUAca  gc     u
-ac   cucu  -    a       CGC         UC        ag  aaagg 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 169306830-169306939 [-]

Mature ptr-miR-218-5p

• Accession: MIMAT0002570
• Description: Pan troglodytes ptr-miR-218-5p mature miRNA
• Sequence: 25 - UUGUGCUUGAUCUAACCAUGU - 45
• Evidence: not_experimental

Mature ptr-miR-218-2-3p

• Accession: MIMAT0052234
• Description: Pan troglodytes ptr-miR-218-2-3p mature miRNA
• Sequence: 68 - AUGGUUCUGUCAAGCACCGCG - 88
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24