Stem-loop ptr-mir-218-1

Accession

MI0002873

Description

Pan troglodytes ptr-mir-218-1 precursor miRNA

Sequence

731 reads, 9.0 reads per million, 16 experiments

gugauaauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugcgagguaugaguaAAACAUGGUUCCGUCAAGCAccauggaacgucacgcagcuuucuaca
(((..((.((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).))))..))).

Structure

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cACGAACUG  UUGGUACA  Aaug   a
a   cu  -  a   a   c      c         CC        -A    agu 

Annotation confidence Medium

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr4: 20855976-20856085 [+]

Mature ptr-miR-218-5p

• Accession: MIMAT0002570
• Description: Pan troglodytes ptr-miR-218-5p mature miRNA
• Sequence: 25 - UUGUGCUUGAUCUAACCAUGU - 45
• Evidence: not_experimental

Mature ptr-miR-218-1-3p

• Accession: MIMAT0052233
• Description: Pan troglodytes ptr-miR-218-1-3p mature miRNA
• Sequence: 64 - AAACAUGGUUCCGUCAAGCA - 83
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24