Stem-loop ppy-mir-218-1

Accession

MI0002872

Description

Pongo pygmaeus ppy-mir-218-1 precursor miRNA

Sequence

gugauaauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugcgagguaugaguaaaacaugguuccgucaagcaccauggaacgucacgcagcuuucuaca
(((..((.((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).))))..))).

Structure

-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr4: 20528531-20528640 [+]

Mature ppy-miR-218

• Accession: MIMAT0002569
• Description: Pongo pygmaeus ppy-miR-218 mature miRNA
• Sequence: 25 - UUGUGCUUGAUCUAACCAUGU - 45
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24