miRBase entry: ggo-mir-199a

Stem-loop ggo-mir-199a

Accession

MI0002830

Description

Gorilla gorilla ggo-mir-199a precursor miRNA

Literature search

1 open access papers mention ggo-mir-199a
(2 sentences)

Sequence

30245 reads, 1907.0 reads per million, 4 experiments

aggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugccguuguACAGUAGUCUGCACAUUGGUUAgacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).

Structure

aggaa   u  ggaga    -    c   gcC       U        C   U  --  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU ca  gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| ||| ||  ||   
     cga ga     ggga cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
----a   -  -----    a    u   AUU       C        -   u  ug  gu

Annotation confidence High

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 151190886-151190995 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-199a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-199a-5p

Accession	MIMAT0002527
Description	Gorilla gorilla ggo-miR-199a-5p mature miRNA
Sequence	31 - CCCAGUGUUCAGACUACCUGUU - 52
Evidence	not_experimental

Mature ggo-miR-199a-3p

Accession	MIMAT0061265
Description	Gorilla gorilla ggo-miR-199a-3p mature miRNA
Sequence	70 - ACAGUAGUCUGCACAUUGGUUA - 91
Evidence	experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24