Stem-loop ppa-mir-181c

Accession

MI0002814

Description

Pan paniscus ppa-mir-181c precursor miRNA

Sequence

cggaaaauuugccaaggguuugggggAACAUUCAACCUGUCGGUGAGUuugggcagcucaggcaaaccaucgaccguugaguggacccugaggccuggaauugccauccu
.(((.......(((..(((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).))))))))........))).

Structure

c   -aaauuug   ag     g    AA        CU       A     ggca 
 gga        cca  gguuu gggg  CAUUCAAC  GUCGGUG GUuug    g
 |||        |||  ||||| ||||  ||||||||  ||||||| |||||    c
 ccu        ggu  ccgga uccc  gugaguug  cagcuac caaac    u
u   accguuaa   --     g    ag        -c       -     ggac 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 14168150-14168259 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-181c

Mature ppa-miR-181c

• Accession: MIMAT0002512
• Description: Pan paniscus ppa-miR-181c mature miRNA
• Sequence: 27 - AACAUUCAACCUGUCGGUGAGU - 48
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24