Stem-loop ptr-mir-181c

Accession

MI0002812

Description

Pan troglodytes ptr-mir-181c precursor miRNA

Literature search

8 open access papers mention ptr-mir-181c
(25 sentences)

Sequence

9200 reads, 73.0 reads per million, 24 experiments

cggaaaauuugccaaggguuugggggAACAUUCAACCUGUCGGUGAGUUUgggcagcucaggcaaACCAUCGACCGUUGAGUGGACccugaggccuggaauugccauccu
.(((.......(((..(((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).))))))))........))).

Structure

c   -aaauuug   ag     g    AA        CU       A     ggca 
 gga        cca  gguuu gggg  CAUUCAAC  GUCGGUG GUUUg    g
 |||        |||  ||||| ||||  ||||||||  ||||||| |||||    c
 ccu        ggu  ccgga uccC  GUGAGUUG  CAGCUAC CAaac    u
u   accguuaa   --     g    AG        -C       -     ggac 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 14620816-14620925 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-181c

Mature ptr-miR-181c-5p

• Accession: MIMAT0002510
• Description: Pan troglodytes ptr-miR-181c-5p mature miRNA
• Sequence: 27 - AACAUUCAACCUGUCGGUGAGUUU - 50
• Evidence: not_experimental

Mature ptr-miR-181c-3p

• Accession: MIMAT0052229
• Description: Pan troglodytes ptr-miR-181c-3p mature miRNA
• Sequence: 66 - ACCAUCGACCGUUGAGUGGAC - 86
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24