Stem-loop ggo-mir-181a-2

Accession

MI0002805

Description

Gorilla gorilla ggo-mir-181a-2 precursor miRNA

Literature search

1 open access papers mention ggo-mir-181a-2
(9 sentences)

Sequence

46104 reads, 3725.0 reads per million, 4 experiments

agaagggcuaucaggccaggcuucagaggacuccaaggAACAUUCAACGCUGUCGGUGAGUuugggauuugaaaaaACCACUGACCGUUGACUGUACcuugggguccuua
.((((((((....))))...)))).(((((((((((((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))))))))))))).

Structure

agaagggcuaucaggccaggcuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucC UGU AGUUGC  CAGUCAC CAaa    u
------------------------a             A   C      --       -    aaag 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 108102155-108102264 [+]

Mature ggo-miR-181a-5p

• Accession: MIMAT0002503
• Description: Gorilla gorilla ggo-miR-181a-5p mature miRNA
• Sequence: 39 - AACAUUCAACGCUGUCGGUGAGU - 61
• Evidence: not_experimental

Mature ggo-miR-181a-2-3p

• Accession: MIMAT0061263
• Description: Gorilla gorilla ggo-miR-181a-2-3p mature miRNA
• Sequence: 77 - ACCACUGACCGUUGACUGUAC - 97
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24